5R5U

PanDDA analysis group deposition -- Crystal Structure of FIBRINOGEN-LIKE GLOBE DOMAIN OF HUMAN TENASCIN-C in complex with Z1545312521

• PDB DOI: https://doi.org/10.2210/pdb5R5U/pdb
• Deposition Group: G_1002131 (changed state) ExploreG_1002131

• Classification: IMMUNE SYSTEM
• Organism(s): Homo sapiens
• Expression System: Escherichia coli
• Mutation(s): No 


• Deposited: 2020-02-28 Released: 2020-10-28 
• Deposition Author(s): Coker, J.A., Bezerra, G.A., von Delft, F., Arrowsmith, C.H., Bountra, C., Edwards, A.M., Yue, W.W., Marsden, B.D.

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 1.52 Å
• R-Value Free: 0.230 
• R-Value Work: 0.196 
• R-Value Observed: 0.198 

Literature

PanDDA analysis group deposition

Coker, J.A., Bezerra, G.A., von Delft, F., Arrowsmith, C.H., Bountra, C., Edwards, A.M., Yue, W.W., Marsden, B.D.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors and generated by PISA (software)

Macromolecule Content

• Total Structure Weight: 25.42 kDa 
• Atom Count: 1,866 
• Modelled Residue Count: 211 
• Deposited Residue Count: 220 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Tenascin C (Hexabrachion), isoform CRA_a	A	220	Homo sapiens	Mutation(s): 0  Gene Names: TNC, hCG_29852
UniProt & NIH Common Fund Data Resources
Find proteins for P24821 (Homo sapiens) Explore P24821  Go to UniProtKB:  P24821
PHAROS:  P24821 GTEx:  ENSG00000041982

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
NTV (Subject of Investigation/LOI)	B [auth A]	(2S)-N-(3-chloro-2-methylphenyl)oxolane-2-carboxamide C12 H14 Cl N O2 BKWNJEPRFSSIFE-NSHDSACASA-N

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 1.52 Å
• R-Value Free: 0.230 
• R-Value Work: 0.196 
• R-Value Observed: 0.198 
• Space Group: P 4₁ 2₁ 2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 77.42	α = 90
b = 77.42	β = 90
c = 71.81	γ = 90

Software Package:

Software Name	Purpose
REFMAC	refinement
Aimless	data scaling
PDB_EXTRACT	data extraction
XDS	data reduction
REFMAC	phasing

Structure Validation

Entry History 

Deposition Data

• Released Date: 2020-10-28 
Deposition Author(s): Coker, J.A., Bezerra, G.A., von Delft, F., Arrowsmith, C.H., Bountra, C., Edwards, A.M., Yue, W.W., Marsden, B.D.

Revision History  

• Version 1.0: 2020-10-28
  Type: Initial release
  
• Version 1.1: 2024-11-13
  Changes: Data collection, Database references, Structure summary